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A small plane crashes mysteriously in a forest, killing all on board. Amita & Dr. Finch help Charlie repair the plane's black boxes. When Charlie is able to test the in-flight computer, he uncovers the surprising truth behind the crash. Meanwhile, Charlie is also busy tracking down a burglar after his house is broken into.
Although credited, Diane Farr did not appear in this episode. Her character, Megan Reeves, was mentioned near the beginning of the episode.
There is a flaw in the premise of the episode plot. Even though the transponder squawk of an aircraft may become 'invisible', it will still appear as an unidentified radar blip. Thus, the computer virus is not going to render a smuggling plane completely invisible.