The Homeworlds Congress is dissolved.
Marcus' reaction to having his orders questioned by another officer (i.e. charging Marsh with mutiny and having him sentenced to death) no doubt discouraged anyone else from questioning him in the future.
We see the genesis of Napier's resistance cell.
Phaeton: "The birth of the Neosapien order is a thing of beauty. It would be unthinkable to not witness the most important event in history...the moment the Neosapiens seize their destiny. The reign of the old humanity ends this day. We, the stepchildren of mankind, are now its rulers. Think, Typhonus, what the rule of the Neosapiens means. Justice, at last. Logic, at last. Order, at last. Our laws will prevail. What glories the Homeworlds will see, governed by our even hand!"