Buzz Lightyear gets knocked out, and Zurg decides to use this to his advantage and he gets Buzz to think that he is 1, 000 years into the future. Buzz, however, believes this ruse and he begins getting questioned by kids about Star Command, since Star Command has been disbanded. Buzz begins to tell the kids stories about Star Command and even begins to share secrets about Star Command to them. Little did Buzz know that the kids where really hornets that where sent by Zurg to learn the information. Now, Zurg begins to attack Star Command, using Buzz’s secrets and now it is up to Team Lightyear to save the day.
Star Command hosts their yearly "Rookie of the Year" event with Mira, Booster, and XR all up for the title. Meanwhile Zurg begins to attack the Lumini Summit, keeping Buzz busy while the three other members of Team Lightyear must guard the LCM's.
One of the members of Star Command is infected with a Wirewolf curse/disease and he needs rescuing by none other than Team Lightyear. Can our heroes save this colleague from a fate worse then death?
Star Command receives a distress call, about an alien race's queen being in danger. However, not just the queen is in danger, but the entire race. The race is being brought down by a plague of some sort.
The LGMs’ develop a trash compactor that ends up getting stolen by Zurg. Zurg then uses it to do his evil biddings, like for instance he uses it to compress Capitol Planet’s sun. Can Buzz Lightyear’s team stop Zurg’s evil plans and get the trash compactor away from him?
Team Lightyear must deal with these Leach-like beings who can take over people’s bodies.
The (distant) future Buzz Lightyear goes back to the current Buzz Lightyear's time to stop Mira from being killed in the near future. The only problem is that the future Buzz Lightyear has all-timers, and can't remember exactly when, where, or how Mira is going to be killed, as well as who or what killed her. Will he remember in time?
Mira serves as the body guard for the President and one of the President's representatives to a conference. Zurg attacks them, and Mira and the others find themselves on a planet being followed by Zurg. Mira deduces that if they use the radio, Zurg will find them so Mira, the President and Smoltz must find a way to survive and be rescued without attracting the attention of Zurg.
Team Lightyear is forced to handle Traffic Duty when there is a diplomatic faux pas with the Porcelon Ambassadorial Delegates.
After Zurg steals a very high-tech device from Santa Claus, Christmas seems to be ruined. Now, Buzz and the gang must get into the Christmas sprite and help Santa deliver the presents to the children all around the world.
Gravitina is up to no good, so Commander Nebula decides to send Buzz's team to go get her into custody. However, Gravitina's plans involve asking Buzz out. She does, but Buzz refuses causing her to make his head grow to a big size. Now, Buzz has left Star Command and has his mind set on getting back into Star Command by taking down Gravitina and getting his head reduced to its’ normal size.
Team Lightyear is in a battle with a space mummy.
Starship 42 begins to act up; So Buzz has it turned off. XR is unhappy with this, as he has fallen in love with the machine, so he decides to re-activate it only to run away with it. Now, the team must set out in a starship 5.5 and find their friend and their means of transportation.