| 27 :02x01 - A is for Anonymous (Jun/05/2006) | | With Phobos gone, everyone thinks things are back to normal, including Taranee, who now fears losing her friends and becoming a quiet wall flower again. What no one realizes, is that the danger has just begun | | Guest Stars: Candi Milo as Trill, Mrs. Knickerbocker, Grey Delisle as Miranda, B. J. Ward as The Mage, Steven Jay Blum (1) as Raythor, Dee Bradley Baker as Frost/Gargoyle/ Aldarn | Director: Norman Leblanc (1), Franck Leguay, Bruno Issaly
Writer: Greg Weisman | |
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| 28 :02x02 - B is for Betrayal (Jun/16/2006) | | Cornelia and Caleb are still mad at each other and the Knights of Vegence are attacking, looking for revenge. Meanwhile the girls meet who chose them as Guardians. | |
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| 30 :02x04 - D is for Dangerous (Jun/26/2006) | | Nerissa sends dangerous creatures called Annihilators to destroy Meridian. Meanwhile, Matt asks Caleb to train him as a warrior | |
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| 31 :02x05 - E is for Enemy (Jul/14/2006) | | The girls new enemy, Nerissa, invades their dreams and dooms them to nightmares. Meanwhile the girls must find a way to keep Will's mom from moving her away | |
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| 32 :02x06 - F is for Facades (Jul/17/2006) | | Caleb attempts to win Cornelia back, but is blocked out by Cornelia's secret relationship with Peter Cook. Meanwhile, Cornelia is busy keeping up the facade that she is her own older sister to impress Peter | |
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| 33 :02x07 - G is for Garbage (Jul/24/2006) | | Blunk finds the Horn of Hypnos, and Irma must team up with the garbage loving passling in order to save the day | |
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| 34 :02x08 - H is for Hunted (Jul/31/2006) | | Will, trying to get out of doing chores, creates and Astral Drop to do them for her. But Nerissa interferes with the plan, and leaves Will to pick up the pieces and find the Astral Drop. Meanwhile the hunted Astral Drop makes Will her own prey | |
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| 35 :02x09 - I is for Illusion (Aug/09/2006) | While Caleb and Blunk look for the knights of vengance, Sandpit and Nerissa make the W.I.T.C.H.
girls life miserable by the power of illusion to turn them against each other. | |
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| 36 :02x10 - J is for Jewel (Aug/14/2006) | | Elyon starts seeking information on her birth parents from a teardropped-shape jewel from Weira's crown. Meanwhile the Guardians are scattered on their family vacations. | |
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| 37 :02x11 - K is for knowledge (Aug/21/2006) | | The Guardians learn new stuff about their foe Nerissa, who was a one-time holder of the Heart of Kandrakar. | |
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| 38 :02x12 - L is for Loser (Aug/28/2006) | | Sheffield's new student radio K-SHIP, that Irma is now in charge of, ends up calling Martin a loser on the air, now endangers their friendship. | |
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| 39 :02x13 - M is for Mercy (Sep/09/2006) | | Nerissa's crony, Shagon, torturing the girls' friends and family, leading to a hatred-filled showdown that test Will's ability to show mercy | |
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| 40 :02x14 - N is for Narcissist (Sep/16/2006) | | WHen Cornelia signs the girls up for a car wash and doesn't do any actual work, her narcissist behavior gets on the girl's nerves. | |
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| 41 :02x15 - O is for Obedience (Sep/23/2006) | | Irma is demanding total obedience form her radio crew, when they broadcast Vance Michael Justin in ocncert. | |
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| 42 :02x16 - P is for Protectors (Sep/30/2006) | | The Guardians go to another dimension to protect of Zamballa from Nerissa, but the sorceress and her Knights of Destruction try to frame the Guardians for the destruction of the Purple Planet. | |
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| 46 :02x20 - T is for Trauma (Nov/04/2006) | | When a beautiful new transfer student named Stacey arrives at Sheffield, Hay Lin loses her confidence when after she gets her new braces. There is also trauma in store. | |
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| 49 :02x23 - W is for Witch (Oct/28/2006) | | The Guardians have to protect the Heart of the Earth, which is in the form of Lillian's cat, Napoleon. | |
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