| Season 3 | |
| 3x1 | Batgirl Begins (1) |
| 3x2 | Batgirl Begins (2) |
| 3x3 | A Dark Knight to Remember |
| Season 4 | |
| 4x1 | A Matter of Family |
| 4x2 | Team Penguin |
| 4x3 | Clayfaces |
| 4x4 | The Everywhere Man |
| 4x5 | The Breakout |
| 4x6 | Strange New World |
| 4x8 | Seconds |
| 4x9 | Riddler's Revenge |
| 4x10 | Two of a Kind |
| 4x11 | Rumors |
| 4x12 | The Joining (1) |
| 4x13 | The Joining (2) |
| Season 5 | |
| 5x1 | The Batman/Superman Story (1) |
| 5x2 | The Batman/Superman Story (2) |
| 5x3 | Vertigo |
| 5x4 | White Heat |
| 5x5 | A Mirror Darkly |
| 5x6 | Joker Express |
| 5x7 | Ring Toss |
| 5x8 | The Metal Face of Comedy |
| 5x9 | Attack of the Terrible Trio |
| 5x10 | The End of the Batman |
| 5x11 | What Goes Up... |
| 5x12 | Lost Heroes (1) |
| 5x13 | Lost Heroes (2) |